0001 function plotAdditionalInfo(handle, pathway, additionalText, exampleBoxText,...
0002 maxChange, defaultColor, upColor, downColor)
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0035 if nargin<8
0036 downColor=[1 0 0];
0037 end
0038 if nargin<7
0039 upColor=[0 1 0];
0040 end
0041 if nargin<6
0042 defaultColor=[1 1 1];
0043 end
0044 if nargin<5
0045 maxChange=1;
0046 end
0047
0048
0049
0050 dimension=getPathwayDimensions(pathway);
0051
0052
0053 rectangle('edgecolor',[0 0 0], 'facecolor', defaultColor, 'linewidth', 1,...
0054 'position', [dimension(1)+dimension(3)+100 100 700 320],'curvature', [0.1 0.1]);
0055 handle=text(dimension(1)+dimension(3)+100+6, 100+0.5*320,...
0056 exampleBoxText,'fontname','Small Fonts','fontsize',2,...
0057 'interpreter', 'tex','verticalalignment','middle','HorizontalAlignment','left');
0058 handle=text(dimension(1)+dimension(3)+300+126, 20,...
0059 'EXAMPLE:','fontname','Small Fonts','fontsize',4,...
0060 'interpreter', 'tex','HorizontalAlignment','center','verticalalignment','middle');
0061
0062
0063
0064 colorValues=[];
0065 for i=1:11
0066 logvalue=maxChange-(i-1)*0.1*maxChange;
0067 colorValues=[colorValues;...
0068 [defaultColor(1)+(upColor(1)-defaultColor(1))*logvalue/(maxChange)...
0069 defaultColor(2)+(upColor(2)-defaultColor(2))*logvalue/(maxChange)...
0070 defaultColor(3)+(upColor(3)-defaultColor(3))*logvalue/(maxChange)]];
0071 end
0072
0073 for i=1:10
0074 logvalue=i*0.1*maxChange;
0075 colorValues=[colorValues;...
0076 [defaultColor(1)+(downColor(1)-defaultColor(1))*logvalue/(maxChange)...
0077 defaultColor(2)+(downColor(2)-defaultColor(2))*logvalue/(maxChange)...
0078 defaultColor(3)+(downColor(3)-defaultColor(3))*logvalue/(maxChange)]];
0079 end
0080
0081
0082 handle=text(dimension(1)+dimension(3)+100, 560,...
0083 'log10(|condition A|/|condition B|)','fontname','Small Fonts','fontsize',3,...
0084 'interpreter', 'tex','HorizontalAlignment','left','verticalalignment','middle');
0085 lengthLine=40;
0086 startX=dimension(1)+dimension(3)+150;
0087
0088 startY=650;
0089 width=6;
0090 for i=1:size(colorValues,1)
0091 line([startX; startX],[startY+(i-1)*lengthLine; startY+i*lengthLine],'color',colorValues(i,:),'linewidth',width);
0092 end
0093
0094 handle=text(startX+3*width, startY,...
0095 ['- ' num2str(maxChange)],'fontname','Small Fonts','fontsize',3,...
0096 'interpreter', 'tex','HorizontalAlignment','left','verticalalignment','middle');
0097
0098 handle=text(startX+3*width, startY+5.5*lengthLine,...
0099 ['- ' num2str(maxChange/2)],'fontname','Small Fonts','fontsize',3,...
0100 'interpreter', 'tex','HorizontalAlignment','left','verticalalignment','middle');
0101
0102 handle=text(startX+3*width, startY+10.5*lengthLine,...
0103 ['- 0'],'fontname','Small Fonts','fontsize',3,...
0104 'interpreter', 'tex','HorizontalAlignment','left','verticalalignment','middle');
0105
0106 handle=text(startX+3*width, startY+15.5*lengthLine,...
0107 ['- -' num2str(maxChange/2)],'fontname','Small Fonts','fontsize',3,...
0108 'interpreter', 'tex','HorizontalAlignment','left','verticalalignment','middle');
0109
0110 handle=text(startX+3*width, startY+20.5*lengthLine,...
0111 ['- -' num2str(maxChange)],'fontname','Small Fonts','fontsize',3,...
0112 'interpreter', 'tex','HorizontalAlignment','left','verticalalignment','middle');
0113
0114
0115 handle=text(dimension(1)+dimension(3)+100, 1800,...
0116 additionalText,'fontname','Small Fonts','fontsize',3,...
0117 'interpreter', 'none','verticalalignment','top','HorizontalAlignment','left');